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GENCODE (human 39)

The goal of the GENCODE project is to identify and classify all gene features in the human and mouse genomes with high accuracy based on biological evidence, and to release these annotations for the benefit of biomedical research and genome interpretation.

Database Organization European Bioinformatics Institute (EMBL-EBI) 
Database Website https://www.gencodegenes.org/
Location /fdb/GENCODE/Gencode_human/release_39
Last Updated 2021-12-01
Organism Human

63 Relevant Files

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/fdb/GENCODE/Gencode_human/release_39/GRCh38.p13.genome.fa
/fdb/GENCODE/Gencode_human/release_39/GRCh38.p13.genome.fa.fai
/fdb/GENCODE/Gencode_human/release_39/GRCh38.primary_assembly.genome.fa
/fdb/GENCODE/Gencode_human/release_39/GRCh38.primary_assembly.genome.fa.fai
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.2wayconspseudos.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.2wayconspseudos.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.annotation.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.annotation.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.basic.annotation.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.basic.annotation.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.chr_patch_hapl_scaff.annotation.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.chr_patch_hapl_scaff.annotation.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.chr_patch_hapl_scaff.basic.annotation.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.chr_patch_hapl_scaff.basic.annotation.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.lncRNA_transcripts.fa
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.long_noncoding_RNAs.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.long_noncoding_RNAs.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Annotation_remark
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.EntrezGene
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Exon_supporting_feature
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Gene_source
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.HGNC
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.PDB
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.PolyA_feature
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Pubmed_id
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.RefSeq
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Selenocysteine
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.SwissProt
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.TrEMBL
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Transcript_source
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.metadata.Transcript_supporting_feature
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.pc_transcripts.fa
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.pc_translations.fa
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.polyAs.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.polyAs.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.primary_assembly.annotation.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.primary_assembly.annotation.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.tRNAs.gff3
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.tRNAs.gtf
/fdb/GENCODE/Gencode_human/release_39/gencode.v39.transcripts.fa
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/GRCh37.primary_assembly.genome.fa.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.annotation.gff3.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.annotation.gtf.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.basic.annotation.gff3.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.basic.annotation.gtf.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.lncRNA_transcripts.fa.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.long_noncoding_RNAs.gff3.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.long_noncoding_RNAs.gtf.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.map-info.tsv.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.Annotation_remark.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.EntrezGene.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.Gene_source.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.HGNC.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.PDB.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.Pubmed_id.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.RefSeq.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.SwissProt.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.TrEMBL.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.Transcript_source.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.metadata.Transcript_supporting_feature.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.pc_transcripts.fa.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.pc_translations.fa.gz
/fdb/GENCODE/Gencode_human/release_39/GRCh37_mapping/gencode.v39lift37.transcripts.fa.gz

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