Scientific Reference Data
back to index

UCSC rn6 (gbdb)

The UCSC Genomics Institute maintains a broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.

Database Organization UCSC Genomics Institute 
Database Website https://genome.ucsc.edu/
Location /fdb/genomebrowser/gbdb/rn6
Last Updated 2025-06-11
Organism Rattus norvegicus
Related Application ucsc
Update Schedule weekly

125 Relevant Files

Show
/fdb/genomebrowser/gbdb/rn6/rn6.2bit
/fdb/genomebrowser/gbdb/rn6/trackDb.ix
/fdb/genomebrowser/gbdb/rn6/trackDb.ixx
/fdb/genomebrowser/gbdb/rn6/trackDb.offsets
/fdb/genomebrowser/gbdb/rn6/trackDb.offsets.ixx
/fdb/genomebrowser/gbdb/rn6/trackDb.txt
/fdb/genomebrowser/gbdb/rn6/TOGAvHg38v1/HLTOGAannotVsHg38v1.bb
/fdb/genomebrowser/gbdb/rn6/TOGAvHg38v1/HLTOGAannotVsHg38v1.ix
/fdb/genomebrowser/gbdb/rn6/TOGAvHg38v1/HLTOGAannotVsHg38v1.ixx
/fdb/genomebrowser/gbdb/rn6/bbi/clinvarLift.bb
/fdb/genomebrowser/gbdb/rn6/bbi/evaSnp.bb
/fdb/genomebrowser/gbdb/rn6/bbi/cloneEnd/cloneEndcoverageForward.bw
/fdb/genomebrowser/gbdb/rn6/bbi/cloneEnd/cloneEndcoverageReverse.bw
/fdb/genomebrowser/gbdb/rn6/bbi/gc5BaseBw/gc5Base.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor1.CNhs12070.11481-119D5.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor1.CNhs12070.11481-119D5.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor1.CNhs12070.11481-119D5.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor1.CNhs12070.11481-119D5.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor2.CNhs12071.11482-119D6.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor2.CNhs12071.11482-119D6.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor2.CNhs12071.11482-119D6.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor2.CNhs12071.11482-119D6.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor3.CNhs12072.11483-119D7.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor3.CNhs12072.11483-119D7.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor3.CNhs12072.11483-119D7.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%20-%20differentiated%2c%20donor3.CNhs12072.11483-119D7.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor1.CNhs11298.11300-117B4.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor1.CNhs11298.11300-117B4.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor1.CNhs11298.11300-117B4.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor1.CNhs11298.11300-117B4.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor2.CNhs11307.11377-118A9.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor2.CNhs11307.11377-118A9.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor2.CNhs11307.11377-118A9.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor2.CNhs11307.11377-118A9.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor3.CNhs11315.11449-118I9.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor3.CNhs11315.11449-118I9.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor3.CNhs11315.11449-118I9.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Aortic%20Smooth%20Muscle%20cells%2c%20donor3.CNhs11315.11449-118I9.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor1.CNhs11295.11296-117A9.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor1.CNhs11295.11296-117A9.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor1.CNhs11295.11296-117A9.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor1.CNhs11295.11296-117A9.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor2.CNhs11301.11373-118A5.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor2.CNhs11301.11373-118A5.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor2.CNhs11301.11373-118A5.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor2.CNhs11301.11373-118A5.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor3.CNhs11313.11445-118I5.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor3.CNhs11313.11445-118I5.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor3.CNhs11313.11445-118I5.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20Mesenchymal%20stem%20cells%20-%20bone%20marrow%20derived%2c%20donor3.CNhs11313.11445-118I5.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor1.CNhs11293.11295-117A8.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor1.CNhs11293.11295-117A8.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor1.CNhs11293.11295-117A8.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor1.CNhs11293.11295-117A8.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor2.CNhs11302.11372-118A4.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor2.CNhs11302.11372-118A4.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor2.CNhs11302.11372-118A4.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor2.CNhs11302.11372-118A4.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor3.CNhs11312.11444-118I4.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor3.CNhs11312.11444-118I4.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor3.CNhs11312.11444-118I4.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Rat%20hepatocytes%2c%20donor3.CNhs11312.11444-118I4.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Universal%20RNA%20-%20Rat%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10614.10009-101B8.rn6.ctss.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Universal%20RNA%20-%20Rat%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10614.10009-101B8.rn6.ctss.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Universal%20RNA%20-%20Rat%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10614.10009-101B8.rn6.tpm.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/Universal%20RNA%20-%20Rat%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10614.10009-101B8.rn6.tpm.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/ctssMaxCounts.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/ctssMaxCounts.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/ctssTotalCounts.fwd.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/ctssTotalCounts.rev.bw
/fdb/genomebrowser/gbdb/rn6/fantom5/rn6.cage_peak.bb
/fdb/genomebrowser/gbdb/rn6/html/description.html
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToAilMel1.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToBosTau8.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToCalMil1.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToCanFam3.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToCavPor3.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToDanRer10.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToFelCat8.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToGalGal5.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToHg38.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToMelGal5.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToMm10.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToMm39.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToMonDom5.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToOrnAna2.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToOryCun2.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToPanTro5.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToRheMac8.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToRn5.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToRn7.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToTarSyr2.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/liftOver/rn6ToXenTro7.over.chain.gz
/fdb/genomebrowser/gbdb/rn6/multiz20way/multiz20way.maf
/fdb/genomebrowser/gbdb/rn6/multiz20way/phastCons20way.wib
/fdb/genomebrowser/gbdb/rn6/multiz20way/phyloP20way.wib
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/ncbiRefSeqOther.bb
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/ncbiRefSeqOther.ix
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/ncbiRefSeqOther.ixx
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/ncbiRefSeqVersion.txt
/fdb/genomebrowser/gbdb/rn6/ncbiRefSeq/seqNcbiRefSeq.rna.fa
/fdb/genomebrowser/gbdb/rn6/transMap/V5/rn6.ensembl.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/rn6/transMap/V5/rn6.est.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/rn6/transMap/V5/rn6.refseq.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/rn6/transMap/V5/rn6.rna.transMapV5.bigPsl
/fdb/genomebrowser/gbdb/rn6/uniprot/unipAliSwissprot.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipAliTrembl.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipChain.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipConflict.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipDisulfBond.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipDomain.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipFullSeq.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipInterest.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipLocCytopl.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipLocExtra.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipLocSignal.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipLocTransMemb.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipModif.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipMut.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipOther.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipRepeat.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipSplice.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/unipStruct.bb
/fdb/genomebrowser/gbdb/rn6/uniprot/version.txt


OR

Search by keywordSearches through metadata using keywords
Search by filenameSearches through filenames where available