The ESBL has developed a number of software tools that can be accessed at the links below:
- a tool for choosing optimal peptide sequences to be used to produce antibodies.
- information theory-based algorithm to assess the conservation of phosphorylation sites among species.
- a tool that uses information theory to generate sequence logos from a list of peptide sequences surrounding a phosphorylated residue.
- a tool that converts MS-identified peptides containing a specific feature (e.g. a phosphorylation site) to sequences of given length with the feature in the center.
- a program for phosphorylation site assignment in LC-MS/MS data.
- a program to match peptide sequences to entries in NCBI Reference Sequence (
) Protein Database.
Temporal Pattern Mining (TPM) algorithm
- a tool that clusters time-series data sets according to time-course pattern.
Automated Bioinformatics Extractor (ABE)
- a batch tool for extraction of specified information about specific proteins from
Conditional Allele Mouse Planner (CAMP)
- a tool for designing protocols for breeding transgenic and knockout mice with cost estimation.
Renal Inner Medulla Free-Energy Calculator
- a tool for calculation of net free energy change in steady-state models of the renal concentrating mechanism.
Go to Proteomics and Transcriptomics Databases
Return to ESBL Main Page
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